Handles both Kubernetes standard resources as well as custom resource definitions.Tracks in real-time activities of resources running in your Kubernetes cluster.K9s continually watches Kubernetes for changes and offers subsequent commands to interact with your observed resources. The aim of this project is to make it easier to navigate, observe and manage your deployed applications in the wild. TFEM (ANSI C code): Transcription Factor Expectation Maximization, an algorithm for detecting DNA regulatory motifs by incorperating positional trends in information content.K9s is a terminal based UI to interact with your Kubernetes clusters. GATA was developed by David Nix in our lab. GATA (platform independent): Graphic Alignment Tool for Comparative Sequence Analysis. GMEP (available for Unix only): Compute genome-mean expression profiles from expressionĪnd sequence data. Maple Tree was developed by Lisa Simirenko in our lab.Ĭombined Expression Data and Sequence Analysis Maple Tree is a java-based, open source, cross-platform visualization tool to graphically browse the results of clustering analyses from our Cluster and Fuzzy K clustering software, and many other clustering and analysis programs. Supports tree-based and imageīased browsing of hierarchical trees. TreeView : Graphically browse results ofĬlustering and other analyses from Cluster. Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering. It's available here.įuzzyK is a C++ command line program that will perform fuzzy k-means clustering on gene expression data.
#Cluster treeview mac os
Michiel de Hoon of the University of Tokyo has created a version of Cluster (called Cluster 3.0) that implements the same algorithms as my software, but will run on Windows, Mac OS X, Linux and UNIX. Principal component analysis.Hierarchical clustering methods described in Includes hierarchical clustering, self-organizing maps (SOMs), k-means clustering, Both written byĬluster : Perform a variety of types of clusterĪnalysis and other types of processing on large microarray datasets. Visualizing the results of complex microarray experiments. Updated November 27,2002.Ĭluster and TreeView are an integrated pair of programs for analyzing and Outputs to tab-delimited text files for transfer to anyĭatabase.
Includes semi-automatic definition of grids and complex pixelĪnd spot analyses.
#Cluster treeview registration
Registration is not required to download software. Registration is free, and is used to track usage and to provide software updates.
#Cluster treeview how to
Large-scale turnover of functional transcription-factor binding sites in DrosophilaĪll software produced by our lab may be downloaded and used free of charge by academic and other non-profit researchers.Ĭommercial use of the ScanAlyze, Cluster and/or TreeView executable and/or source code requries a license from Stanford University.įor information on how to obtain a license, please click here.Ĭommercial use of the GMEP software requires a license from Lawrence Berkeley National Lab.įor information on how to obtain a license, please contact LBNL's Technology Transfer Division. Click here for more infoĭiscordance of gene and species trees in Drosophila
We are looking for two postdoctoral fellows to work on computational analysis of the evolution of gene regulation in Drosophila.
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